Clinical decision support system
Welcome to Thai TB clinical decision support system. This system builded for analyse M. Tuberculosis whole genome sequencing data then generate clinical decision support report for clinical use.
Our well craft NGS pipeline compose of reads quality filtering with Trimmomatic, reads alignment with BWA and variant calling with GATK4 (Platypus for Ion torrent). Users can come with either Fastq data for complete NGS analysis or VCF data for lineage and drug resistant prediction.
Clinical decision support report generate by our service was reference from “Practical guideline for next-generation sequencing of Mycobacterium tuberculosis laboratories and data interpretation”.